Graphical application for alternative splicing quantification and analysis
by Nuno Agostinho nunoagostinho@medicina.ulisboa.pt

Interactive R package with an intuitive Shiny-based graphical interface for alternative splicing quantification and integrative analyses of alternative splicing and gene expression based on The Cancer Genome Atlas (TCGA), the Genotype-Tissue Expression (GTEx) project, Sequence Read Archive (SRA), and user-provided data.

psichomics interactively perform survival, dimensionality reduction and median- and variance-based differential splicing and gene expression analyses that benefit from the incorporation of clinical and molecular sample-associated features (such as tumour stage or survival). Interactive visual access to genomic mapping and functional annotation of selected alternative splicing events is also included.

Tutorial: Interactive Alternative Splicing Analysis of Human Stem Cells Using psichomics

Saraiva-Agostinho N, Barbosa-Morais NL (2019). “psichomics: graphical application for alternative splicing quantification and analysis.” Nucleic Acids Research, 47(2), e7. DOI: 10.1093/nar/gky888.