User Tools

Site Tools


Software developed by the Bioimaging Unit

    • Count cells with specific nuclear and cytoplasmic staining in color images (immunohistochemical staining)
    • Count 2 different cell populations with blue and brown staining in color images (immunohistochemical staining)

Image analysis and visualization software

    • The Swiss army knife of microscopy image processing
    • Fiji Is Just ImageJ focused on the visualization and analysis of microscope images in 2D, 3D, 4D and 5D
    • Icy provides the software resources to visualize, annotate and quantify bioimaging data
    • CellProfiler is free, open-source software for quantitative analysis of biological images

Image viewers from microscopy companies

    • For viewing raw images as well as those analyzed within Imaris

Back to the Bioimaging Wiki

microscopytools.txt · Last modified: 2022/08/30 16:20 by bioimaging