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z3_workstation [2025/01/08 16:28] bioimaging |
z3_workstation [2026/04/17 09:41] (current) bioimaging |
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| - |   <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=workstations-location.png">Bartolomeu Dias wing B12</a><br> | + |   <br><b>Location</b>: Bartolomeu Dias wing <br> |
| → <a href="/facility/bioimaging/doku.php?id=z3_workstation_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Z3 Lightsheet Workstation Usage Statistics</a> | → <a href="/facility/bioimaging/doku.php?id=z3_workstation_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Z3 Lightsheet Workstation Usage Statistics</a> | ||
| </p> | </p> | ||
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| ===== Software ===== | ===== Software ===== | ||
| + | |||
| + | * {{:cellprofiler-icon.png?35|}} **[[https://cellprofiler.org/|CellProfiler 4.2.8]]** | ||
| + | * Open Software for Bioimage Analysis to quantitatively measure phenotypes from thousands of images automatically. | ||
| * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** | * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** | ||
| * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) | * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) | ||
| - | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.1 Desk]]** | + | * {{:matlab_icon.png?35|}} **[[https://www.mathworks.com/products/matlab.html?s_tid=hp_products_matlab|MATLAB R2024b]]** |
| - | * **Airyscan Processing**, Stitching and MIP of .CZI files | + | * Programming and numeric computing platform, with the following toolboxes: Curve Fitting, Image Acquisition and Image Processing, Optimization and Parallel Computing, Partial Differential Equation and Statistics and Machine Learning |
| - | + | ||
| - | * {{zen_black_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Black 3.1 Desk]]** | + | |
| - | * **Lightsheet Processing** | + | |
| * {{:qupath_icon.png?35|}} **[[https://qupath.github.io/|QuPath 0.5.1]]** | * {{:qupath_icon.png?35|}} **[[https://qupath.github.io/|QuPath 0.5.1]]** | ||
| * Open Software for Bioimage Analysis of whole slide images | * Open Software for Bioimage Analysis of whole slide images | ||
| - | |||
| - | * {{:matlab_icon.png?35|}} **[[https://www.mathworks.com/products/matlab.html?s_tid=hp_products_matlab|MATLAB R2024b]]** | ||
| - | * Programming and numeric computing platform, with the following toolboxes: Curve Fitting, Image Acquisition and Image Processing, Optimization and Parallel Computing, Partial Differential Equation and Statistics and Machine Learning | ||
| - | |||
| - | * {{:cellprofiler-icon.png?35|}} **[[https://cellprofiler.org/|CellProfiler 4.2.8]]** | ||
| - | * Open Software for Bioimage Analysis to quantitatively measure phenotypes from thousands of images automatically. | ||
| * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 6]]** | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 6]]** | ||
| * Supports .SLD file format. | * Supports .SLD file format. | ||
| + | |||
| + | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|ZEN Blue 3.13 Desk]]** | ||
| + | * **Airyscan Processing**, **Joint Deconvolution**, Stitching and MIP of .CZI files | ||
| + | |||
| {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the file server using the desktop link. | {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the file server using the desktop link. | ||
z3_workstation.1736350125.txt.gz · Last modified: 2025/01/08 16:28 by bioimaging
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