Bioimaging Wiki

Z3 is a 64-bit PC running Windows 10, equipped with:

• 2x Intel® Xeon Processor E5.2620 @ 2.4GHz
• 128 GB DDR4 RAM memory
• 2x 256 GB SSD + 36 TB disk space
• 8 GB NVIDIA Quadro P4000 (graphics card)
• 28“ TFT monitor

• FIJI
  • FIJI is just ImageJ (“batteries-included” distribution of ImageJ2)

• Zeiss ZEN Blue 3.1 Desk
  • Airyscan Processing, Stitching and MIP of .CZI files

• Zeiss ZEN Black 3.1 Desk
  • Lightsheet Processing

• QuPath 0.5.1
  • Open Software for Bioimage Analysis of whole slide images

• MATLAB R2024b
  • Programming and numeric computing platform, with the following toolboxes: Curve Fitting, Image Acquisition and Image Processing, Optimization and Parallel Computing, Partial Differential Equation and Statistics and Machine Learning

• CellProfiler 4.2.8
  • Open Software for Bioimage Analysis to quantitatively measure phenotypes from thousands of images automatically.

• 3i Slidebook Reader 6
  • Supports .SLD file format.

Data files older than 3 months will be automatically deleted on this system, please copy your data to the file server using the desktop link.

Back to the Equipment page