z3_workstation
Differences
This shows you the differences between two versions of the page.
| Next revision | Previous revision | ||
|
z3_workstation [2025/01/06 02:04] bioimaging created |
z3_workstation [2025/01/08 16:36] (current) bioimaging |
||
|---|---|---|---|
| Line 9: | Line 9: | ||
|   <br> |   <br> | ||
|   <br> |   <br> | ||
| + | Data will be deleted after: <b>3 months</b> | ||
|   <br> |   <br> | ||
|   <br> |   <br> | ||
|   <br> |   <br> | ||
| - |   <br><b>Location</b>: <br> | + |   <br><b>Location</b>: Bartolomeu Dias wing <br> |
| → <a href="/facility/bioimaging/doku.php?id=z3_workstation_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Z3 Lightsheet Workstation Usage Statistics</a> | → <a href="/facility/bioimaging/doku.php?id=z3_workstation_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Z3 Lightsheet Workstation Usage Statistics</a> | ||
| </p> | </p> | ||
| Line 21: | Line 22: | ||
| ===== System overview ===== | ===== System overview ===== | ||
| + | Z3 is a 64-bit PC running Windows 10, equipped with: | ||
| + | * 2x Intel® Xeon Processor E5.2620 @ 2.4GHz | ||
| + | * 128 GB DDR4 RAM memory | ||
| + | * 2x 256 GB SSD + 36 TB disk space | ||
| + | * 8 GB NVIDIA Quadro P4000 (graphics card) | ||
| + | * 28" TFT monitor | ||
| ===== Software ===== | ===== Software ===== | ||
| + | * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** | ||
| + | * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) | ||
| + | |||
| + | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.1 Desk]]** | ||
| + | * **Airyscan Processing**, Stitching and MIP of .CZI files | ||
| + | |||
| + | * {{zen_black_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Black 3.1 Desk]]** | ||
| + | * **Lightsheet Processing** | ||
| + | |||
| + | * {{:qupath_icon.png?35|}} **[[https://qupath.github.io/|QuPath 0.5.1]]** | ||
| + | * Open Software for Bioimage Analysis of whole slide images | ||
| + | |||
| + | * {{:matlab_icon.png?35|}} **[[https://www.mathworks.com/products/matlab.html?s_tid=hp_products_matlab|MATLAB R2024b]]** | ||
| + | * Programming and numeric computing platform, with the following toolboxes: Curve Fitting, Image Acquisition and Image Processing, Optimization and Parallel Computing, Partial Differential Equation and Statistics and Machine Learning | ||
| + | |||
| + | * {{:cellprofiler-icon.png?35|}} **[[https://cellprofiler.org/|CellProfiler 4.2.8]]** | ||
| + | * Open Software for Bioimage Analysis to quantitatively measure phenotypes from thousands of images automatically. | ||
| + | |||
| + | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 6]]** | ||
| + | * Supports .SLD file format. | ||
| + | |||
| + | {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the file server using the desktop link. | ||
| ---- | ---- | ||
| [[resources|Back to the Equipment page]] | [[resources|Back to the Equipment page]] | ||
z3_workstation.1736125447.txt.gz · Last modified: 2025/01/06 02:04 by bioimaging
Page Tools
