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newuser [2021/09/02 16:59] bioimaging |
newuser [2025/07/16 20:54] (current) bioimaging |
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- | <html><img src="/facility/bioimaging/lib/exe/fetch.php?media=new_user_NEG.png"><BR><BR></html> | + | <html><img src="/facility/bioimaging/lib/exe/fetch.php?media=getting_started_section.png"><BR><BR></html> |
- | ====== How to access our equipment... ====== | + | ====== How to access our equipment? ====== |
- | {{::imm_question.jpg?280 |Image by Maria Henriques, João Ferreira and José Rino}} | + | {{::gimm_question.png?210 |Image by Maria Henriques, João Ferreira and José Rino}} |
- | * The Bioimaging Unit equipment is available to iMM researchers and external users. Check our hourly fees: [[billing|{{charge_rates_neg.png?0x35|}}]] | + | -{{:arrow.png?15|}} Our systems are available to GIMM researchers and external users. Check the equipment [[billing|hourly fees]]. |
- | * You need to use iMM's booking system to get access to and book our equipment. Sign in or register here: [[https://imm.agendo.science/|{{booking_system_neg.png?0x35|}}]] | + | -{{:arrow.png?15|}} You need to use GIMM's booking system ([[https://gimm.agendoscience.com/|Agendo]]) to book our equipment. If you are not registered in Agendo yet, please follow [[https://imm.medicina.ulisboa.pt/facility/bioimaging/lib/exe/fetch.php?media=gimm_agendo_registration_instructions.pdf|these instructions]]. |
- | * After registration, you can ask for access to an equipment by clicking on its calendar or [[imm-bioimaging@medicina.ulisboa.pt|emailing us]]. Please check also our [[usage_policy|{{usage_rules_neg.png?0x35|}}]] | + | -{{:arrow.png?15|}} Please fill in our [[https://forms.office.com/pages/responsepage.aspx?id=OZ2DCeYgXUCMCNvF4as7OwAcCvfNUQdGl-1StUi6OCFUQzZLTEJFRFY3SUNJUFRDWkVKS0lKOElKVSQlQCN0PWcu&route=shorturl|Welcome Form]] to give us more information about your experiment and your imaging needs. |
- | * We will reply to you as soon as possible to schedule a consultation, to discuss experimental strategies and decide the most appropriate [[resources|{{equipment_neg.png?0x35|}}]] | + | -{{:arrow.png?15|}} We will schedule a meeting with you to discuss the next steps. Depending on your needs and usage frequency, you may receive training on a particular system for independent usage, or acquire data with our assistance (check details below). |
- | * Depending on your needs and usage frequency, we may acquire images for you or train you to become an independent user (check details below) | + | -{{:arrow.png?15|}} Don't forget to check our [[usage_policy|Policies]]. |
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- | ====== How to acquire (and analyze) data ====== | + | ====== How can we help you? ====== |
- | {{::get_started_info.png?700|}} | + | |
- | {{::consultation.png?50|}} **Consultation** - The first step is to meet us (in person or by Zoom) to discuss your needs and determine the most appropriate microscope. | + | <html> |
+ | <p style="text-align:center"><img src="/facility/bioimaging/lib/exe/fetch.php?media=bioimaging_workflow.png" width=850 align=center></p> | ||
+ | </html> | ||
- | {{::test_first.png?50|}} **Test First** - If necessary, we will give you permissions in the booking system to schedule a test (by us) on a specific microscope. | + | {{::consulting.png?70|}} **Consulting** - The first step is to with meet us to discuss your imaging needs. Please fill in our [[https://forms.office.com/pages/responsepage.aspx?id=OZ2DCeYgXUCMCNvF4as7OwAcCvfNUQdGl-1StUi6OCFUQzZLTEJFRFY3SUNJUFRDWkVKS0lKOElKVSQlQCN0PWcu&route=shorturl|Welcome Form]] first. |
- | {{::we_aqcuire.png?50|}} **We Acquire** - If you only need a few images, we will give you booking permission and do the acquisition for you, no training required. | + | {{::ucourse.png?70|}} **μCourse** - To use our equipment you need to attend a 2h introductory session on the Principles of Microscopy. [[https://forms.office.com/pages/responsepage.aspx?id=OZ2DCeYgXUCMCNvF4as7OwAcCvfNUQdGl-1StUi6OCFUOERNRENHWlJIVTI1VDBCTFg5RlJDQ1BSUCQlQCN0PWcu&route=shorturl|Book a session]] |
- | {{::training.png?50|}} **Training** is __mandatory__ for independent use, even if you have already used the microscope elsewhere. We book the training session. | + | {{::assisted_acquisition.png?70|}} **Assisted Acquisition** - For occasional usage we will assist you with data acquisition, no training required. |
- | {{::assisted_sessions.png?50|}} **Assisted Use** __must occur within 2 weeks__ after training. You will have //in training// booking permissions and our help during the sessions. | + | **If you use a microscope regularly, we can train you to become fully independent:** |
- | + | ||
- | {{::independence.png?50|}} **Independence** - Once you are comfortable with using the microscope on your own, you will be given //regular user// privileges. | + | |
- | {{::image_analysis_and_processing.png?50|}} **Image Analysis** - We can help you analyze your data more efficiently by developing [[microscopytools|image analysis and processing tools]]. | + | {{::training.png?70|}} **Training** is __mandatory__ for independent use, even if you have already used the microscope elsewhere. |
- | **Please Note** | + | {{::independence.png?70|}} **Independence** - After training, you will be given regular user privileges. |
+ | |||
+ | {{::image_analysis.png?70|}} **Image Analysis** - We can help you analyze your data more efficiently, check our [[microscopytools|image analysis and processing tools]]. | ||
+ | |||
+ | {{::publication.png?70|}} **Publication** - We can also help you writing materials and methods and preparing figures for a manuscript with microscopy data. | ||
+ | |||
+ | {{:arrow.png?15|}} **Training Workflow** | ||
+ | |||
+ | - <fc #ffd966>First training session:</fc> we book, your sample ready to image – no data acquired | ||
+ | |||
+ | - <fc #ffd966>Second training session:</fc> we book, your sample ready to image | ||
+ | |||
+ | - <fc #ffd966>Third(+) training session:</fc> you book, no longer than 1 week after first training | ||
+ | |||
+ | {{:arrow.png?15|}} **Please Note** | ||
* After you are a fully independent user, you can request technical assistance when necessary (e.g. for troubleshooting, new settings, etc.) | * After you are a fully independent user, you can request technical assistance when necessary (e.g. for troubleshooting, new settings, etc.) | ||
- | * If you do not book a microscope for assisted sessions within 2 weeks after training, you will have to be trained again | + | * If you do not use a microscope for more than 3 months, assistance is mandatory in your next session |
- | * If you do not use a microscope for more than 3 months, we may contact you to assess the need for re-training | + | * If you do not use a microscope for more than 6 months, you lose access to the system and consulting is mandatory |
- | * We are always available for consultations and advice on all things related to microscopy. Feel free to [[imm-bioimaging@medicina.ulisboa.pt|contact us]] ({{phone_neg.png?15}} 47305), we will gladly help you with your microscopy needs and discuss your ideas. | + | * We are always available for consulting and advice on all things related to microscopy. Feel free to [[bioimaging@gimm.pt|contact us]] (☎ 47305 in Lisbon, 4533 in Oeiras), we will gladly help you with your microscopy needs and discuss your ideas. |
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[[start|Back to the Bioimaging Wiki]] | [[start|Back to the Bioimaging Wiki]] |