microscopytools
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microscopytools [2022/08/30 12:53] bioimaging [Software developed by the Bioimaging Unit] |
microscopytools [2025/01/14 16:41] (current) bioimaging |
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| - | <html><img src="/facility/bioimaging/lib/exe/fetch.php?media=software_neg.png"><BR></html> | + | <html><img src="/facility/bioimaging/lib/exe/fetch.php?media=image_analysis_section.png"><BR></html> |
| - | ===== Software developed by the Bioimaging Unit ===== | + | ===== Software developed by the Bioimaging Platform ===== |
| - | * {{:icon_ubi.png?30|}} **[[software_cclab|Cell Counter L*a*b*]]** | + | * {{:icon_staqtool.png?30|}} **[[software_staqtool|STaQTool - Spot Tracking and Quantification Tool]]** |
| + | * Track diffraction-limited spots in 2D or 3D time-lapse sequences | ||
| + | * Quantify total fluorescence intensity with Gaussian fitting | ||
| + | * Detect single events of fluorescence gain and loss | ||
| + | |||
| + | * {{:logo.png?30|}} **[[software_cclab|Cell Counter L*a*b*]]** | ||
| * Count cells with specific nuclear and cytoplasmic staining in color images (immunohistochemical staining) | * Count cells with specific nuclear and cytoplasmic staining in color images (immunohistochemical staining) | ||
| - | * {{:icon_ubi.png?30|}} **[[software_mcclsm|Multichannel Cell Counter CZI]]** | + | * {{:logo.png?30|}} **[[software_cclab2|Cell Counter L*a*b* 2]]** |
| + | * Count 2 different cell populations with blue and brown staining in color images (immunohistochemical staining) | ||
| + | |||
| + | * {{:logo.png?30|}} **[[software_mccczi|Multichannel Cell Counter CZI]]** | ||
| * Count cells with specific fluorescent labeling combinations - CZI files | * Count cells with specific fluorescent labeling combinations - CZI files | ||
| - | * {{:icon_ubi.png?30|}} **[[software_mcclsm|Multichannel Cell Counter LSM]]** | + | * {{:logo.png?30|}} **[[software_mcclsm|Multichannel Cell Counter LSM]]** |
| * Count cells with specific fluorescent labeling combinations - LSM files | * Count cells with specific fluorescent labeling combinations - LSM files | ||
| - | * {{:icon_ubi.png?30|}} **[[software_mccrgb|Multichannel Cell Counter RGB]]** | + | * {{:logo.png?30|}} **[[software_mccrgb|Multichannel Cell Counter RGB]]** |
| * Count cells with specific fluorescent labeling combinations - RGB TIF files | * Count cells with specific fluorescent labeling combinations - RGB TIF files | ||
| - | * {{:icon_ubi.png?30|}} **[[software_mcc4tiff|Multichannel Cell Counter 4TIFF]]** | + | * {{:logo.png?30|}} **[[software_mcc4tiff|Multichannel Cell Counter 4TIFF]]** |
| * Count cells with specific fluorescent labeling combinations - 4 TIF files | * Count cells with specific fluorescent labeling combinations - 4 TIF files | ||
| - | |||
| - | * {{:icon_staqtool.png?30|}} **[[software_staqtool|STaQTool - Spot Tracking and Quantification Tool]]** | ||
| - | * Track diffraction-limited spots in 2D or 3D time-lapse sequences | ||
| - | * Quantify total fluorescence intensity with Gaussian fitting | ||
| - | * Detect single events of fluorescence gain and loss | ||
| - | |||
| ===== Image analysis and visualization software ===== | ===== Image analysis and visualization software ===== | ||
microscopytools.1661856784.txt.gz · Last modified: 2022/08/30 12:53 by bioimaging
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