imaris
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imaris [2025/01/06 01:56] bioimaging created |
imaris [2025/01/13 17:04] (current) bioimaging [Software Installed] |
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| - |   <br> | + |   <br><b>Year installed</b>: 2020 <br> |
| - |   <br> | + |   <br><b>Location</b>: main lab <br> |
| - |   <br> | + | |
| - |   <br> | + | |
| - |   <br><b>Location</b>: <br> | + | |
| → <a href="/facility/bioimaging/doku.php?id=imaris_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Imaris Workstation Usage Statistics</a> | → <a href="/facility/bioimaging/doku.php?id=imaris_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Imaris Workstation Usage Statistics</a> | ||
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| ===== System overview ===== | ===== System overview ===== | ||
| + | This workstation has Imaris v10.2.0 for image 3D visualization and analysis workflows. | ||
| + | It can also be booked for processing demanding FIJI, QuPath and Ilastik operations, and other open-source tools (eg, AI/ML workflows). | ||
| - | ===== Software ===== | + | ===== Workstation specs (2025) ===== |
| + | * CPU: Intel i9 12900X (16 cores, 24 logical processors) @3.20GHz | ||
| + | * RAM: 128 GB DDR4 | ||
| + | * Graphics: nVidia GeForce RTX3060 - 12 GB VRAM | ||
| + | * OS: Windows10 Pro 64 Bits | ||
| + | * Data storage: 1TB SSD (C:) + 8Tb HHD (D:) + 2TB SSD (E:) (both temp space only!) | ||
| + | => Data is automatically deleted after 3 months of inactivity in (D:) drive<html> <br> </html>=> Data is automatically deleted after 1 months of inactivity in (E:) drive | ||
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| + | ===== Software Installed ===== | ||
| + | |||
| + | * {{:imaris_icon.png?35|}} **[[https://imaris.oxinst.com/products/imaris-for-core-facilities|Imaris]]** | ||
| + | * Imaris v10.20.0; SOFTWARE FOR 3D VISUALIZATION AND ANALYSIS | ||
| + | |||
| + | * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** | ||
| + | * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) | ||
| + | |||
| + | * {{:qupath_icon.png?40|}} **[[https://qupath.github.io/|QuPath 0.4.3]]** | ||
| + | * Open Software for Bioimage Analysis of whole slide images | ||
| + | |||
| + | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 2022]]** | ||
| + | * Supports .SLD file format. | ||
| + | |||
| + | * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements/viewer|Nikon NIS-Elements Viewer 5.21]]** | ||
| + | * Supports .ND2 file format | ||
| + | |||
| + | |||
| + | {{:warning.png?25|}} Data files older than **1 or 3 months** will be automatically deleted on this system, depending on the drive. Please copy your data to the server using the desktop link. | ||
| ---- | ---- | ||
| [[resources|Back to the Equipment page]] | [[resources|Back to the Equipment page]] | ||
imaris.1736125009.txt.gz · Last modified: 2025/01/06 01:56 by bioimaging
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