Bioimaging Wiki

This workstation has Imaris v10.2.0 for image 3D visualization and analysis workflows. It can also be booked for processing demanding FIJI, QuPath and Ilastik operations, and other open-source tools (eg, AI/ML workflows).

• CPU: Intel i9 12900X (16 cores, 24 logical processors) @3.20GHz
• RAM: 128 GB DDR4
• Graphics: nVidia GeForce RTX3060 - 12 GB VRAM
• OS: Windows10 Pro 64 Bits
• Data storage: 1TB SSD (C:) + 8Tb HHD (D:) + 2TB SSD (E:) (both temp space only!)

⇒ Data is automatically deleted after 3 months of inactivity in (D:) drive
⇒ Data is automatically deleted after 1 months of inactivity in (E:) drive

• Imaris
  • Imaris v10.20.0; SOFTWARE FOR 3D VISUALIZATION AND ANALYSIS

• FIJI
  • FIJI is just ImageJ (“batteries-included” distribution of ImageJ2)

• QuPath 0.4.3
  • Open Software for Bioimage Analysis of whole slide images

• 3i Slidebook Reader 2022
  • Supports .SLD file format.

• Nikon NIS-Elements Viewer 5.21
  • Supports .ND2 file format

Data files older than 1 or 3 months will be automatically deleted on this system, depending on the drive. Please copy your data to the server using the desktop link.

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