User Tools

Site Tools


zeiss_lightsheet_z1

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
zeiss_lightsheet_z1 [2016/05/30 17:38]
bioimaging
zeiss_lightsheet_z1 [2024/01/28 12:07] (current)
bioimaging
Line 1: Line 1:
 <​html>​ <​html>​
-<img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=zeiss_lightsheet_z1_name.jpg">+<img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=zeiss_lightsheet_z1_name_new.png">
 <table style="​border:​0px solid white;">​ <table style="​border:​0px solid white;">​
 <tr style="​border:​0px solid white;">​ <tr style="​border:​0px solid white;">​
 <td style="​border:​0px solid white;">​ <td style="​border:​0px solid white;">​
-<a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=zeiss_lightsheet_z1_wiki.jpg"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=zeiss_lightsheet_z1_wiki.jpg" width=300></​a>​+<a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=zeiss_lightsheet_z1_wiki_2022.png"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=zeiss_lightsheet_z1_wiki_2022.png" width=300></​a>​
 <td style="​border:​0px solid white;">​ <p style="​line-height:​1.8">​ <td style="​border:​0px solid white;">​ <p style="​line-height:​1.8">​
-<​b>​Location</​b>:​ <a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=zeiss_lightsheet_z1_map.jpg">​Room ​P3-A-3</​a><​br>​  +<​b>​Location</​b>:​ <a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=zeiss_lightsheet_z1_map_new_p2a24.png">​Room ​P2-A-24</​a> ​(<img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=phone_neg.png"​ width=15>​ 47219) ​<br>  
-<​b>​Manufacturer</​b>:​ <a href="​http://​www.zeiss.de/​micro"​ target="​_blank">​Carl Zeiss MicroImaging</​a><​br>​ +<​b>​Manufacturer</​b>:​ <a href="​http://​www.zeiss.de/​micro"​ target="​_blank">​ZEISS Microscopy</​a><​br>​ 
-<​b>​Model</​b>:​ <a href="http://www.zeiss.com/microscopy/​en_de/​products/​imaging-systems/​lightsheet-z-1.html" target="​_blank">​Lightsheet Z.1</​a><​br>​+<​b>​Model</​b>:​ <a href="https://www.youtube.com/watch?​v=vKHQudCKVGc" target="​_blank">​Lightsheet Z.1</​a> ​(click for Zeiss webinar)<​br>​ 
 +<​b>​Nickname</​b>:​ "​Lightsheet"​<br>
 <​b>​Software</​b>:​ ZEN 2014 SP1 <br> <​b>​Software</​b>:​ ZEN 2014 SP1 <br>
 <​b>​Year</​b>:​ 2016 <br> <​b>​Year</​b>:​ 2016 <br>
 <​b>​SN</​b>:​ 2583000193 <br> <​b>​SN</​b>:​ 2583000193 <br>
 &nbsp <br> &nbsp <br>
 +Data will be deleted after: <b>3 months</​b>​
 &nbsp <br> &nbsp <br>
 &nbsp <br> &nbsp <br>
 &nbsp <br> &nbsp <br>
 &nbsp <br> &nbsp <br>
-&rarr; <a href="​https://​imm.medicina.ulisboa.pt/​intranet/​booking/​new/​129"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=date.png"> ​ Zeiss Lightsheet Z1 Booking</​a>​ +&rarr; <a href="/​facility/​bioimaging/​doku.php?​id=zeiss_lightsheet_z1_usage"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=chart_line.png"> ​ Zeiss Lightsheet ​Z.1 Usage Statistics</​a>​
- <​br>​  +
-&rarr; <a href="/​facility/​bioimaging/​doku.php?​id=zeiss_lightsheet_z1_usage"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=chart_line.png"> ​ Zeiss Lightsheet ​Z1 Usage Statistics</​a>​+
  </​p>​  </​p>​
 </td> </td>
Line 28: Line 28:
 ===== Microscope overview ===== ===== Microscope overview =====
  
-{{  :​lightsheet_z.jpg?​0x380|}} The Zeiss Lightsheet ​Z1 is a //light sheet fluorescence microscope//​ able to image optical sections of large samples at subcellular resolution and very fast rates, with almost no phototoxicity or bleaching. [[http://blogs.zeiss.com/microscopy/​news/​en/​wp-content/uploads/sites/3/2016/02/light-sheet-fluorescence-microscopy-selchow-huisken-zeiss-web-622x418.jpg|It splits fluorescence excitation and detection into two separate light paths]], with the axis of illumination being perpendicular to the detection axis.  +{{  :​lightsheet_z.jpg?​0x380|}} The Zeiss Lightsheet ​Z.1 is a //light sheet fluorescence microscope//​ able to image optical sections of large samples at subcellular resolution and very fast rates, with almost no phototoxicity or bleaching. [[https://www.zeiss.com/​content/​dam/Microscopy/Products/imaging-systems/lattice-lightsheet/lattice-lightsheet-7/zeiss-lattice-lightsheet-7-beam-splitting.svg|It splits fluorescence excitation and detection into two separate light paths]], with the axis of illumination being perpendicular to the detection axis.  
-[[https://​imm.medicina.ulisboa.pt/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=lightsheet_illumination.jpg|Since only a single thin section of the sample is illuminated by the light sheet]], optical sectioning is achieved without a pinhole or image processing deconvolution. Light from the in-focus plane is collected by a sCMOS camera rather than pixel by pixel as in a point scanning laser confocal. This allows you to collect images faster and with less excitation light than you would with many other optical-sectioning microscopy techniques. You can image living samples in water or fixed samples where [[http://blogs.zeiss.com/microscopy/news/en/references-for-clearing-protocols/|tissue clearing]] has been performed. Samples are mounted not on coverslips but inside [[https://​imm.medicina.ulisboa.pt/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=lightsheet_chambers.jpg|special chambers]] that provide heating and cooling. The system is equipped with lasers from green to far red (488, 561 and 638 nm excitation wavelenghts) and appropriate fluorescence emission filters. With this system you can image live drosophila and zebrafish samples or use tissue clearing to perform optical sectioning deep into large fluorescent samples such as tissue sections, brains, embryos, organs, spheroids or biopsies. If you need higher resolution and have a smaller and thinner sample, check instead a confocal microscope such as the spinning disk [[3i_marianas_sdc|3i Marianas SDC]], the //line scanning// [[zeiss_lsm_7_live|Zeiss LSM 7 Live]] or the point scanners [[zeiss_lsm_880|Zeiss LSM 880]] and [[zeiss_lsm_710|Zeiss LSM 710]]. A dedicated computer running [[https://​www.arivis.com/​en/​imaging-science/​arivis-vision4d|arivis Vision4D]] is available for working with multi-channel 2D, 3D and 4D images you generate in the system. ​+[[https://​imm.medicina.ulisboa.pt/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=lightsheet_illumination.jpg|Since only a single thin section of the sample is illuminated by the light sheet]], optical sectioning is achieved without a pinhole or image processing deconvolution. Light from the in-focus plane is collected by a sCMOS camera rather than pixel by pixel as in a point scanning laser confocal. This allows you to collect images faster and with less excitation light than you would with many other optical-sectioning microscopy techniques. You can image living samples in water or fixed samples where [[https://imm.medicina.ulisboa.pt/facility/bioimaging/lib/exe/​fetch.php?​media=en_poster_overview-clearing-methods_rel-2.0.pdf|tissue clearing]] has been performed. Samples are mounted not on coverslips but inside [[https://​imm.medicina.ulisboa.pt/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=lightsheet_chambers.jpg|special chambers]] that provide heating and cooling. The system is equipped with lasers from green to far red (488, 561 and 638 nm excitation wavelenghts) and appropriate fluorescence emission filters. With this system you can image live drosophila and zebrafish samples or use tissue clearing to perform optical sectioning deep into large fluorescent samples such as tissue sections, brains, embryos, organs, spheroids or biopsies. A dedicated computer running [[https://​www.arivis.com/​en/​imaging-science/​arivis-vision4d|arivis Vision4D]] is available for working with multi-channel 2D, 3D and 4D images you generate in the system. ​
  
-{{info.gif?|}} Click on the image on the left to see the system beam path in higher detail+{{:info.png?25|}} Click on the image on the right to see the system beam path in higher detail 
 + 
 +{{:​warning.png?​25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link.
  
 ===== Additional information for sample preparation ===== ===== Additional information for sample preparation =====
Line 38: Line 40:
   * **Penetration depth**: up to 5.6 mm   * **Penetration depth**: up to 5.6 mm
  
-  ​* [[http://applications.zeiss.com/C125792900358A3F/0/E6504BFCBC3C2D39C1257BD500417CA6/$FILE/EN_41_011_058_LightsheetZ1_Sample-Preparation.pdf| Sample Preparation for Light Sheet Microscopy (white paper)]] +    ​* [[https://imm.medicina.ulisboa.pt/facility/bioimaging/​lib/​exe/​fetch.php?​media=en_poster_overview-clearing-methods_rel-2.0.pdf|Clearing Methods in Microscopy (poster)]]  
-  * [[http://applications.zeiss.com/C125792900358A3F/0/76513AA44D0C6E4FC1257F0E004E657B/$FILE/EN_41_050_023_poster_overview-clearing-methods.pdf|Clearing Methods in Microscopy ​(poster)]] +    * [[https://hcbi.fas.harvard.edu/files/​lightsheetz1_sample-preparation_zeiss.pdf| Sample Preparation for Light Sheet Microscopy (white paper)]] 
-  * [[http://blogs.zeiss.com/microscopy/news/en/references-for-clearing-protocols/|References for Tissue ​Clearing Protocols]]+    * [[https://asset-downloads.zeiss.com/catalogs/download/mic/b91bc689-66ab-4d85-b3f6-c31ebea22ba7/EN_wp_Lightsheet-Z.1_Expanding-Clearing-Solutions.pdf| Improved Imaging of Cleared Samples ​(application note)]] 
 +  * [[https://www.youtube.com/watch?​v=Ki1wtoXIkis|Sample Preparation for Whole Organisms, Plants, and 3D Cell & Tissue Cultures (video)]] 
 +  * [[https://www.youtube.com/watch?​v=Ql7T7LrvI_I|ZEISS Microscopy How-to: Mount cleared samples in Lightsheet Z.1 (video)]] 
 +  * [[https://​www.youtube.com/​watch?​v=vKHQudCKVGc|ZEISS Webinar: In Vivo and Cleared ​Tissue ​Imaging with Light Sheet Fluorescence Microscopy (video)]] 
 + 
 +===== Tutorials for Image Analysis with Arivis ===== 
 +  * [[https://​www.arivis.com/​lunchtime-academy|Lunchtime Academy – Getting started with arivis Vision4D]] 
 ===== System components ===== ===== System components =====
  
 ==== LASERs ==== ==== LASERs ====
-^  Laser Unit  ^  Wavelength ​ ^  Maximum Power  ​^ ​ Current Status ​ ^ +^  Laser Unit  ^  Wavelength ​ ^  Maximum Power  ^ 
-|  Solid State 488  |  488 nm  |  30 mW  ​| ​ ok  | +|  Solid State 488  |  488 nm  |  30 mW  | 
-|  Solid State 561 |  561 nm  |  20 mW  ​| ​ ok  | +|  Solid State 561 |  561 nm  |  20 mW  | 
-|  Solid State 638  |  638 nm  |  75 mW  ​| ​ ok  |+|  Solid State 638  |  638 nm  |  75 mW  |
  
 ==== Objectives (Illumination) ==== ==== Objectives (Illumination) ====
Line 56: Line 65:
 ==== Objectives (Detection) ==== ==== Objectives (Detection) ====
  
-^  Magnification ​  ​^ ​ Model  ^  ​Type  ​^ ​ NA  ^  WD (mm)  ^ +^  Magnification ​  ​^ ​ Model  ^  ​Immersion ​ ​^ ​ NA  ^  WD (mm)  ​^ ​ Reference ​ ^ 
-|  20x  |  [[https://​www.micro-shop.zeiss.com/​?​s=10396935ab3601&​l=en&​p=uk&​f=o&​a=v&​m=s&​id=421452-9700-000|W Plan-Apochromat]]  |  Water  |  ​1.00  ​ ​2.4 ​ | +|  20x  ​| ​ W Plan-Apochromat DIC 75mm  |  Water  |  1.00  |  2.4  ​| ​ [[https://​www.micro-shop.zeiss.com/​en/​de/​shop/​objectives/​421452-9700-000/Objective-W-Plan-Apochromat-20x-1.0-DIC-M27-75mm#​|421452-9700-000]] ​ | 
-|  20x  |  Clr Plan-Neofluar Corr nd=1.45 ​ |  Clearing ​ |  1.00  |  5.6  |+|  20x  |  Clr Plan-Neofluar Corr nd=1.45 ​85mm  ​| ​ Clearing ​ |  1.00  |  5.6  ​| ​ [[https://​www.micro-shop.zeiss.com/​en/​de/​shop/​objectives/​421459-9970-000/​Objective-Clr-Plan-Neofluar-20x-1.0-Corr-nd-1.45-M32-85mm|421459-9970-000]] ​ |
  
 ==== Filtersets (Water) ==== ==== Filtersets (Water) ====
Line 66: Line 75:
 |  Cy3  |  575-615 nm  | |  Cy3  |  575-615 nm  |
 |  DRAQ5  |  LP 660 nm  | |  DRAQ5  |  LP 660 nm  |
- 
-===== If you want to use the system: ===== 
- 
-  * Please contact the [[about|Bioimaging Facility]] (Ext: 47316). Sample chamber mounting and system initialization is performed by our staff. 
  
 ---- ----
-[[resources|Back to the Resources ​page]]+[[resources|Back to the Equipment ​page]]
zeiss_lightsheet_z1.1464622730.txt.gz · Last modified: 2016/05/30 17:38 by bioimaging