This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Last revision Both sides next revision | ||
microscopytools [2021/05/07 20:41] bioimaging [Image analysis and visualization software] |
microscopytools [2022/08/30 16:17] bioimaging |
||
---|---|---|---|
Line 2: | Line 2: | ||
===== Software developed by the Bioimaging Unit ===== | ===== Software developed by the Bioimaging Unit ===== | ||
+ | |||
+ | * {{:icon_staqtool.png?30|}} **[[software_staqtool|STaQTool - Spot Tracking and Quantification Tool]]** | ||
+ | * Track diffraction-limited spots in 2D or 3D time-lapse sequences | ||
+ | * Quantify total fluorescence intensity with Gaussian fitting | ||
+ | * Detect single events of fluorescence gain and loss | ||
* {{:icon_ubi.png?30|}} **[[software_cclab|Cell Counter L*a*b*]]** | * {{:icon_ubi.png?30|}} **[[software_cclab|Cell Counter L*a*b*]]** | ||
* Count cells with specific nuclear and cytoplasmic staining in color images (immunohistochemical staining) | * Count cells with specific nuclear and cytoplasmic staining in color images (immunohistochemical staining) | ||
+ | |||
+ | * {{:icon_ubi.png?30|}} **[[software_cclab2|Cell Counter L*a*b* 2]]** | ||
+ | * Count 2 cell populations with different stainings in color images (immunohistochemical staining) | ||
+ | |||
+ | * {{:icon_ubi.png?30|}} **[[software_mccczi|Multichannel Cell Counter CZI]]** | ||
+ | * Count cells with specific fluorescent labeling combinations - CZI files | ||
* {{:icon_ubi.png?30|}} **[[software_mcclsm|Multichannel Cell Counter LSM]]** | * {{:icon_ubi.png?30|}} **[[software_mcclsm|Multichannel Cell Counter LSM]]** | ||
Line 14: | Line 25: | ||
* {{:icon_ubi.png?30|}} **[[software_mcc4tiff|Multichannel Cell Counter 4TIFF]]** | * {{:icon_ubi.png?30|}} **[[software_mcc4tiff|Multichannel Cell Counter 4TIFF]]** | ||
* Count cells with specific fluorescent labeling combinations - 4 TIF files | * Count cells with specific fluorescent labeling combinations - 4 TIF files | ||
- | |||
- | * {{:icon_staqtool.png?30|}} **[[software_staqtool|STaQTool - Spot Tracking and Quantification Tool]]** | ||
- | * Track diffraction-limited spots in 2D or 3D time-lapse sequences | ||
- | * Quantify total fluorescence intensity with Gaussian fitting | ||
- | * Detect single events of fluorescence gain and loss | ||
- | |||
===== Image analysis and visualization software ===== | ===== Image analysis and visualization software ===== | ||