microscopytools
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microscopytools [2016/04/17 03:50] bioimaging created |
microscopytools [2017/07/24 18:35] bioimaging |
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| ===== Software written by Bioimaging Facility staff ===== | ===== Software written by Bioimaging Facility staff ===== | ||
| - | * {{:icon_ubi.png?30|}} [[software_cclab|**Cell Counter L*a*b* **]] | + | * {{:icon_ubi.png?30|}} **[[software_cclab|Cell Counter L*a*b*]]** |
| * Count cells with specific nuclear and cytoplasmic staining in color images (immunohistochemical staining) | * Count cells with specific nuclear and cytoplasmic staining in color images (immunohistochemical staining) | ||
| - | * {{:icon_ubi.png?30|}} [[software_mcclsm|**Multichannel Cell Counter LSM**]] | + | * {{:icon_ubi.png?30|}} **[[software_mcclsm|Multichannel Cell Counter LSM]]** |
| * Count cells with specific fluorescent labeling combinations - LSM files | * Count cells with specific fluorescent labeling combinations - LSM files | ||
| - | * {{:icon_ubi.png?30|}} [[software_mccrgb|**Multichannel Cell Counter RGB**]] | + | * {{:icon_ubi.png?30|}} **[[software_mccrgb|Multichannel Cell Counter RGB]]** |
| * Count cells with specific fluorescent labeling combinations - TIF files | * Count cells with specific fluorescent labeling combinations - TIF files | ||
| - | * {{:icon_staqtool.png?30|}} [[software_staqtool|**STaQTool - Spot Tracking and Quantification Tool**]] | + | * {{:icon_staqtool.png?30|}} **[[software_staqtool|STaQTool - Spot Tracking and Quantification Tool]]** |
| * Track diffraction-limited spots in 2D or 3D time-lapse sequences | * Track diffraction-limited spots in 2D or 3D time-lapse sequences | ||
| * Quantify total fluorescence intensity with Gaussian fitting | * Quantify total fluorescence intensity with Gaussian fitting | ||
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| * {{icy-icon.png?35|}} **[[http://icy.bioimageanalysis.org/|ICY]]** | * {{icy-icon.png?35|}} **[[http://icy.bioimageanalysis.org/|ICY]]** | ||
| * Icy provides the software resources to visualize, annotate and quantify bioimaging data | * Icy provides the software resources to visualize, annotate and quantify bioimaging data | ||
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| + | * {{::cell_profiler.png?35|}} **[[http://cellprofiler.org/|CellProfiler]]** | ||
| + | * CellProfiler is free, open-source software for quantitative analysis of biological images | ||
| ===== Image viewers from microscopy companies ===== | ===== Image viewers from microscopy companies ===== | ||
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| * Supports CZI file format | * Supports CZI file format | ||
| - | * {{slidebook-icon.png?35|}} **[[https://www.intelligent-imaging.com/reader.php|Slidebook Reader]]** | + | * {{slidebook-icon.png?35|}} **[[https://www.intelligent-imaging.com/reader.php|3i Slidebook Reader]]** |
| * Supports SLD file format | * Supports SLD file format | ||
| ---- | ---- | ||
| [[start|Back to the Bioimaging Wiki]] | [[start|Back to the Bioimaging Wiki]] | ||
microscopytools.txt ยท Last modified: 2022/08/30 16:20 by bioimaging
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