colossus
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colossus [2021/01/22 01:04] bioimaging [Software] |
colossus [2024/01/18 01:23] (current) bioimaging |
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| + | Data will be deleted after: <b>3 months</b> | ||
|   <br> |   <br> | ||
| - |   <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-16</a><br> | + |   <br> |
| - | → <a href="https://my.agendo.science/calendar/?id=MzdjYWxlbmRhcnM="><img src="/facility/bioimaging/lib/exe/fetch.php?media=date.png"> Colossus Booking</a> | + |   <br><b>Location</b>: no longer available<br> |
| - | <br> | + | |
| → <a href="/facility/bioimaging/doku.php?id=colossus_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Colossus Usage Statistics</a> | → <a href="/facility/bioimaging/doku.php?id=colossus_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Colossus Usage Statistics</a> | ||
| </p> | </p> | ||
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| ===== System overview ===== | ===== System overview ===== | ||
| - | Colossus is a 64-bit PC running Windows 7, equipped with: | + | Colossus is a 64-bit PC running Windows 10, equipped with: |
| - | * 4 Quad-core processors (that's 16 processors) @ 3.0GHz | + | * 4 Quad-core processors (16 processors) @ 3.0GHz |
| * 128 GB RAM memory | * 128 GB RAM memory | ||
| - | * 512 GB SSD + 10 Tb disk space (2 x 5 Tb disks for data storage) | + | * 512 GB SSD + 10 TB disk space (2 x 5 TB disks for data storage) |
| - | * 8 GB NVidia GTX 1070 (graphic card) | + | * 4 GB Radeon R9 290X OC (graphic card) |
| * 26" TFT monitor | * 26" TFT monitor | ||
| + | |||
| + | Please [[imm-bioimaging@medicina.ulisboa.pt|contact us]] if you wish to use the workstation remotely. | ||
| ===== Software ===== | ===== Software ===== | ||
| - | * {{:imaris_icon.png?35|}} **[[https://imaris.oxinst.com/|Imaris 9.5]]** | + | * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** |
| - | * Visualization, segmentation and interpretation of 3D and 4D microscopy datasets | + | * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) |
| + | |||
| + | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.8]]** | ||
| + | * Stitching and MIP of .CZI files | ||
| - | * {{zen_black_icon.png?40|}} **[[https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html|Zeiss ZEN Black]]** | + | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 2022]]** |
| - | * With license for Airyscan Processing | + | * Supports .SLD file format. |
| - | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html|Zeiss ZEN Blue]]** | + | * {{::las_x.png?35|}} **[[https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/|LAS X Office]]** |
| - | * Supports CZI file format | + | * Supports .LIF file format. |
| - | * {{slidebook_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook#reader|3i Slidebook 6.0.19]]** | + | * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements/viewer|Nikon NIS-Elements Viewer 5.21]]** |
| - | * Supports SLD file format. With full license for Montage. | + | * Supports .ND2 file format |
| - | * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements|Nikon NIS-Elements]]** | + | * {{::ndpview_icon.png?35|}} **[[https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html|Hamamatsu NDP.View 2]]** |
| - | * Supports ND2 file format (please request dongle for full functionality) | + | * Supports .NDPI file format |
| * {{::living_image.png?32|}} **[[https://www.perkinelmer.com/product/li-software-for-lumina-1-seat-add-on-128110|Living Image 3.2]]** | * {{::living_image.png?32|}} **[[https://www.perkinelmer.com/product/li-software-for-lumina-1-seat-add-on-128110|Living Image 3.2]]** | ||
colossus.1611273880.txt.gz · Last modified: 2021/01/22 01:04 by bioimaging
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