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colossus [2020/03/22 16:30]
bioimaging
colossus [2024/01/18 01:23] (current)
bioimaging
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 &nbsp <br> &nbsp <br>
 &nbsp <br> &nbsp <br>
 +Data will be deleted after: <b>3 months</​b>​
 &nbsp <br> &nbsp <br>
-&nbsp <​br><​b>​Location</​b>: ​<a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=colossus_map_new.png">​Room P3-A-16</​a><​br>​  +&nbsp <​br>​ 
-&rarr; <a href="​https://​imm.medicina.ulisboa.pt/​intranet/​booking/​127"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=date.png"> ​ Colossus Booking</​a>​ +&nbsp <​br><​b>​Location</​b>: ​no longer available<​br> ​
- <​br> ​+
 &rarr; <a href="/​facility/​bioimaging/​doku.php?​id=colossus_usage"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=chart_line.png"> ​ Colossus Usage Statistics</​a>​ &rarr; <a href="/​facility/​bioimaging/​doku.php?​id=colossus_usage"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=chart_line.png"> ​ Colossus Usage Statistics</​a>​
  </​p>​  </​p>​
Line 21: Line 21:
  
 ===== System overview ===== ===== System overview =====
-Colossus is a 64-bit PC running Windows ​7, equipped with: +Colossus is a 64-bit PC running Windows ​10, equipped with: 
-  * 4 Quad-core processors (that'​s ​16 processors) @ 3.0GHz+  * 4 Quad-core processors (16 processors) @ 3.0GHz
   * 128 GB RAM memory   * 128 GB RAM memory
-  * 512 GB SSD + 10 Tb disk space (2 x 5 Tb disks for data storage) +  * 512 GB SSD + 10 TB disk space (2 x 5 TB disks for data storage) 
-  * GB NVidia GTX 1070 (graphic card)+  * GB Radeon R9 290X OC (graphic card)
   * 26" TFT monitor   * 26" TFT monitor
 +
 +Please [[imm-bioimaging@medicina.ulisboa.pt|contact us]] if you wish to use the workstation remotely.
  
 ===== Software ​ ===== ===== Software ​ =====
  
-  * {{:imaris_icon.png?​35|}} ​ **[[https://​imaris.oxinst.com/|Imaris 9.5]]** +  * {{:fiji_icon.png?35|}} **[[https://​imagej.net/​software/​fiji/|FIJI]]** 
-      * Visualization,​ segmentation and interpretation ​of 3D and 4D microscopy datasets+      * FIJI is just ImageJ (“batteries-included” distribution ​of ImageJ2)
  
-  * {{zen_black_icon.png?35|}} **[[https://​www.zeiss.com/​microscopy/​int/products/microscope-software/​zen.html|Zeiss ZEN Black]]** +  * {{zen_icon.png?35|}} **[[https://​www.zeiss.com/​microscopy/​en/​products/​software/​zeiss-zen.html|Zeiss ZEN Blue 3.8]]** 
-      * With license for Airyscan Processing+      * Stitching and MIP of .CZI files
  
-{{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link.+  * {{slidebook_2022_icon.png?35|}} **[[https://​www.intelligent-imaging.com/​slidebook|3i Slidebook Reader 2022]]** 
 +      * Supports .SLD file format.
  
-If you need a Mac image processing workstation running OS X, check out the [[big_guy|Big Guy]].+  * {{::​las_x.png?​35|}} **[[https://​www.leica-microsystems.com/​products/​microscope-software/​p/​leica-las-x-ls/​|LAS ​Office]]** 
 +      * Supports .LIF file format. 
 + 
 +  * {{nis_icon.png?​35|}} **[[https://​www.microscope.healthcare.nikon.com/​products/​software/​nis-elements/​viewer|Nikon NIS-Elements Viewer 5.21]]** 
 +      * Supports .ND2 file format 
 + 
 +  * {{::​ndpview_icon.png?​35|}} **[[https://​www.hamamatsu.com/​eu/​en/​product/​life-science-and-medical-systems/​digital-slide-scanner/​U12388-01.html|Hamamatsu NDP.View 2]]** 
 +      * Supports .NDPI file format 
 + 
 +  * {{::​living_image.png?​32|}} **[[https://​www.perkinelmer.com/​product/​li-software-for-lumina-1-seat-add-on-128110|Living Image 3.2]]** 
 +      * Analyze data from IVIS Lumina 
 + 
 + 
 +{{:​warning.png?​25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link.
  
 ---- ----
-[[resources|Back to the Resources ​page]]+[[resources|Back to the Equipment ​page]]
colossus.1584891006.txt.gz · Last modified: 2020/03/22 16:30 by bioimaging