colossus
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colossus [2017/11/24 00:06] bioimaging |
colossus [2024/01/18 01:23] (current) bioimaging |
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| <html> | <html> | ||
| - | <img src="/facility/bioimaging/lib/exe/fetch.php?media=colossus_name.jpg"> | + | <img src="/facility/bioimaging/lib/exe/fetch.php?media=colossus_name_new.png"> |
| <table style="border:0px solid white;"> | <table style="border:0px solid white;"> | ||
| <tr style="border:0px solid white;"> | <tr style="border:0px solid white;"> | ||
| <td style="border:0px solid white;"> | <td style="border:0px solid white;"> | ||
| - | <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_wiki.jpg"><img src="/facility/bioimaging/lib/exe/fetch.php?media=colossus_wiki.jpg" width=300></a> | + | <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus.png"><img src="/facility/bioimaging/lib/exe/fetch.php?media=colossus.png"></a> |
| <td style="border:0px solid white;"> <p style="line-height:1.8"> | <td style="border:0px solid white;"> <p style="line-height:1.8"> | ||
| - | <b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=ubi_map.jpg">Room P3-A-1</a> (<img src="/facility/bioimaging/lib/exe/fetch.php?media=telephone_icon.gif" width=15> 47316) <br> | ||
|   <br> |   <br> | ||
|   <br> |   <br> | ||
|   <br> |   <br> | ||
| + | Data will be deleted after: <b>3 months</b> | ||
|   <br> |   <br> | ||
|   <br> |   <br> | ||
| - |   <br> | + |   <br><b>Location</b>: no longer available<br> |
| - |   <br> | + | |
| - |   <br> | + | |
| - |   <br> | + | |
| - |   <br> | + | |
| - | → <a href="https://imm.medicina.ulisboa.pt/intranet/booking/127"><img src="/facility/bioimaging/lib/exe/fetch.php?media=date.png"> Colossus Booking</a> | + | |
| - | <br> | + | |
| → <a href="/facility/bioimaging/doku.php?id=colossus_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Colossus Usage Statistics</a> | → <a href="/facility/bioimaging/doku.php?id=colossus_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Colossus Usage Statistics</a> | ||
| </p> | </p> | ||
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| ===== System overview ===== | ===== System overview ===== | ||
| - | Colossus is a 64-bit PC running Windows 7, equipped with: | + | Colossus is a 64-bit PC running Windows 10, equipped with: |
| - | * 4 Quad-core processors (that's 16 processors) @ 3.0GHz | + | * 4 Quad-core processors (16 processors) @ 3.0GHz |
| - | * 128 Gb RAM memory | + | * 128 GB RAM memory |
| - | * 512 Gb SSD + 10 Tb disk space (2 x 5 Tb disks for data storage) | + | * 512 GB SSD + 10 TB disk space (2 x 5 TB disks for data storage) |
| - | * 4 Gb AMD Radeon R9 290 (graphic card) | + | * 4 GB Radeon R9 290X OC (graphic card) |
| * 26" TFT monitor | * 26" TFT monitor | ||
| - | {{warning.jpg?20|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link. | + | Please [[imm-bioimaging@medicina.ulisboa.pt|contact us]] if you wish to use the workstation remotely. |
| + | |||
| + | ===== Software ===== | ||
| + | |||
| + | * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** | ||
| + | * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) | ||
| + | |||
| + | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.8]]** | ||
| + | * Stitching and MIP of .CZI files | ||
| + | |||
| + | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 2022]]** | ||
| + | * Supports .SLD file format. | ||
| + | |||
| + | * {{::las_x.png?35|}} **[[https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/|LAS X Office]]** | ||
| + | * Supports .LIF file format. | ||
| + | |||
| + | * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements/viewer|Nikon NIS-Elements Viewer 5.21]]** | ||
| + | * Supports .ND2 file format | ||
| + | |||
| + | * {{::ndpview_icon.png?35|}} **[[https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html|Hamamatsu NDP.View 2]]** | ||
| + | * Supports .NDPI file format | ||
| + | |||
| + | * {{::living_image.png?32|}} **[[https://www.perkinelmer.com/product/li-software-for-lumina-1-seat-add-on-128110|Living Image 3.2]]** | ||
| + | * Analyze data from IVIS Lumina | ||
| - | If you need a Mac image processing workstation running OS X, check out the [[big_guy|Big Guy]]. | + | {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link. |
| ---- | ---- | ||
| - | [[resources|Back to the Resources page]] | + | [[resources|Back to the Equipment page]] |
colossus.1511478407.txt.gz · Last modified: 2017/11/24 00:06 by bioimaging
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