Bioimaging Wiki

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&nbsp <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-5</a><br> 
&rarr; <a href="https://my.agendo.science/calendar/?id=MzdjYWxlbmRhcnM="><img src="/facility/bioimaging/lib/exe/fetch.php?media=date.png">  Colossus Booking</a>
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&rarr; <a href="/facility/bioimaging/doku.php?id=colossus_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png">  Colossus Usage Statistics</a>
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===== System overview =====
Colossus is a 64-bit PC running Windows 7, equipped with:
  * 4 Quad-core processors (that's 16 processors) @ 3.0GHz
  * 128 GB RAM memory
  * 512 GB SSD + 10 Tb disk space (2 x 5 Tb disks for data storage)
  * 4 GB Radeon R9 290X OC (graphic card)
  * 26" TFT monitor

Please [[imm-bioimaging@medicina.ulisboa.pt|contact us]] if you wish to use the workstation remotely.

===== Software  =====

  * {{:imaris_icon.png?35|}}  **[[https://imaris.oxinst.com/|Imaris 9.5]]**
      * Visualization, segmentation and interpretation of 3D and 4D microscopy datasets

  * {{zen_black_icon.png?40|}} **[[https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html|Zeiss ZEN Black]]**
      * With license for Airyscan Processing

  * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html|Zeiss ZEN Blue]]**
      * Supports CZI file format

  * {{slidebook_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook#reader|3i Slidebook 6.0.19]]**
      * Supports SLD file format. With full license for Montage.

  * {{::las_x.png?35|}} **[[https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/|LAS X Core]]**
      * Supports LIF file format. With Mosaic Merge to stitch images acquired with the Tile Scan function.

  * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements|Nikon NIS-Elements]]**
      * Supports ND2 file format (please request dongle for full functionality)

  * {{::living_image.png?32|}} **[[https://www.perkinelmer.com/product/li-software-for-lumina-1-seat-add-on-128110|Living Image 3.2]]**
      * Analyze data from IVIS Lumina


{{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link.

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