Bioimaging Wiki

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&nbsp <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-16</a><br> 
&rarr; <a href="https://imm.medicina.ulisboa.pt/intranet/booking/127"><img src="/facility/bioimaging/lib/exe/fetch.php?media=date.png">  Colossus Booking</a>
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&rarr; <a href="/facility/bioimaging/doku.php?id=colossus_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png">  Colossus Usage Statistics</a>
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===== System overview =====
Colossus is a 64-bit PC running Windows 7, equipped with:
  * 4 Quad-core processors (that's 16 processors) @ 3.0GHz
  * 128 GB RAM memory
  * 512 GB SSD + 10 Tb disk space (2 x 5 Tb disks for data storage)
  * 8 GB NVidia GTX 1070 (graphic card)
  * 26" TFT monitor

===== Software  =====

  * {{:imaris_icon.png?35|}}  **[[https://imaris.oxinst.com/|Imaris 9.5]]**
      * Visualization, segmentation and interpretation of 3D and 4D microscopy datasets

  * {{zen_black_icon.png?40|}} **[[https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html|Zeiss ZEN Black]]**
      * With license for Airyscan Processing

  * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html|Zeiss ZEN Blue]]**
      * Supports CZI file format

  * {{slidebook_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook#reader|3i Slidebook Reader]]**
      * Supports SLD file format

  * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements|Nikon NIS-Elements]]**
      * Supports ND2 file format (please request dongle for full functionality)


{{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link.

If you need a Mac image processing workstation running OS X, check out the [[big_guy|Big Guy]].

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