colossus
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colossus [2020/03/22 16:25] bioimaging |
colossus [2023/08/06 16:48] bioimaging [System overview] |
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|   <br> |   <br> | ||
|   <br> |   <br> | ||
| + | Data will be deleted after: <b>3 months</b> | ||
|   <br> |   <br> | ||
| - |   <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-16</a><br> | + |   <br> |
| - | → <a href="https://imm.medicina.ulisboa.pt/intranet/booking/127"><img src="/facility/bioimaging/lib/exe/fetch.php?media=date.png"> Colossus Booking</a> | + |   <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-5</a><br> |
| - | <br> | + | |
| → <a href="/facility/bioimaging/doku.php?id=colossus_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Colossus Usage Statistics</a> | → <a href="/facility/bioimaging/doku.php?id=colossus_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Colossus Usage Statistics</a> | ||
| </p> | </p> | ||
| Line 21: | Line 21: | ||
| ===== System overview ===== | ===== System overview ===== | ||
| - | Colossus is a 64-bit PC running Windows 7, equipped with: | + | Colossus is a 64-bit PC running Windows 10, equipped with: |
| - | * 4 Quad-core processors (that's 16 processors) @ 3.0GHz | + | * 4 Quad-core processors (16 processors) @ 3.0GHz |
| * 128 GB RAM memory | * 128 GB RAM memory | ||
| - | * 512 GB SSD + 10 Tb disk space (2 x 5 Tb disks for data storage) | + | * 512 GB SSD + 10 TB disk space (2 x 5 TB disks for data storage) |
| - | * 8 GB NVidia GTX 1070 (graphic card) | + | * 4 GB Radeon R9 290X OC (graphic card) |
| * 26" TFT monitor | * 26" TFT monitor | ||
| + | |||
| + | Please [[imm-bioimaging@medicina.ulisboa.pt|contact us]] if you wish to use the workstation remotely. | ||
| ===== Software ===== | ===== Software ===== | ||
| Line 33: | Line 35: | ||
| * Visualization, segmentation and interpretation of 3D and 4D microscopy datasets | * Visualization, segmentation and interpretation of 3D and 4D microscopy datasets | ||
| - | {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link. | + | * {{zen_black_icon.png?40|}} **[[https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html|Zeiss ZEN Black]]** |
| + | * With license for Airyscan Processing | ||
| - | If you need a Mac image processing workstation running OS X, check out the [[big_guy|Big Guy]]. | + | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html|Zeiss ZEN Blue]]** |
| + | * Supports CZI file format | ||
| + | |||
| + | * {{slidebook_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook#reader|3i Slidebook 6.0.19]]** | ||
| + | * Supports SLD file format. With full license for Montage. | ||
| + | |||
| + | * {{::las_x.png?35|}} **[[https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/|LAS X Core]]** | ||
| + | * Supports LIF file format. With Mosaic Merge to stitch images acquired with the Tile Scan function. | ||
| + | |||
| + | * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements|Nikon NIS-Elements]]** | ||
| + | * Supports ND2 file format (please request dongle for full functionality) | ||
| + | |||
| + | * {{::living_image.png?32|}} **[[https://www.perkinelmer.com/product/li-software-for-lumina-1-seat-add-on-128110|Living Image 3.2]]** | ||
| + | * Analyze data from IVIS Lumina | ||
| + | |||
| + | |||
| + | {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the iMM server using the desktop link. | ||
| ---- | ---- | ||
| - | [[resources|Back to the Resources page]] | + | [[resources|Back to the Equipment page]] |
colossus.txt · Last modified: 2024/01/18 01:23 by bioimaging
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