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colossus [2016/04/17 00:45]
bioimaging created
colossus [2023/08/06 17:15]
bioimaging [Software]
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 <​html>​ <​html>​
-<img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=colossus_name.jpg">+<img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=colossus_name_new.png">
 <table style="​border:​0px solid white;">​ <table style="​border:​0px solid white;">​
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-<a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=colossus_wiki.jpg"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=colossus_wiki.jpg" ​width=300></​a>​+<a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=colossus.png"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=colossus.png"></​a>​
 <td style="​border:​0px solid white;">​ <p style="​line-height:​1.8">​ <td style="​border:​0px solid white;">​ <p style="​line-height:​1.8">​
-<​b>​Location</​b>:​ <a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=ubi_map.jpg">​Room P3-A-1</​a>​ (<img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=telephone_icon.gif"​ width=15>​ 47316) <​br> ​ 
 &nbsp <br> &nbsp <br>
 &nbsp <br> &nbsp <br>
 &nbsp <br> &nbsp <br>
 +Data will be deleted after: <b>3 months</​b>​
 &nbsp <br> &nbsp <br>
 &nbsp <br> &nbsp <br>
-&nbsp <br> +&nbsp <​br><​b>Location</b><a href="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=colossus_map_new.png">​Room P3-A-5</​a><​br>​  
-&​nbsp ​<br> +&rarr; <a href="/​facility/​bioimaging/​doku.php?​id=colossus_usage"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=chart_line.png">  ​Colossus ​Usage Statistics</​a>​
-&​nbsp ​<br> +
-&nbsp <​br>​ +
-&nbsp <​br>​ +
-&​rarr; ​<a href="​https://​imm.medicina.ulisboa.pt/​intranet/​booking/​month.php?​user=BIGGUY&​rid=50"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=date.png"> ​ Big Guy Booking</a> +
- <br>  +
-&rarr; <a href="/​facility/​bioimaging/​doku.php?​id=big_guy_usage"><​img src="/​facility/​bioimaging/​lib/​exe/​fetch.php?​media=chart_line.png">  ​Big Guy Usage Statistics</​a>​+
  </​p>​  </​p>​
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 ===== System overview ===== ===== System overview =====
-Big Guy is a dual boot 64 bit Mac Pro running ​either Mac OS X Snow Leopard or Windows 10, equipped with: +Colossus ​is a 64-bit PC running Windows 10, equipped with: 
-  * Quad-core processors (that's 8 processors) +  * Quad-core processors (16 processors) ​@ 3.0GHz 
-  * 16 Gb RAM memory +  * 128 GB RAM memory 
-  * 2 Tb disk space (1 Tb for each operating system+  * 512 GB SSD + 10 TB disk space (2 x 5 TB disks for data storage
-  * 512 Mb graphic card +  * 4 GB Radeon R9 290X OC (graphic card) 
-  * 30" TFT monitor+  * 26" TFT monitor 
 + 
 +Please [[imm-bioimaging@medicina.ulisboa.pt|contact us]] if you wish to use the workstation remotely. 
 + 
 +===== Software ​ ===== 
 + 
 +  * {{:​fiji_icon.png?​35|}} **[[https://​imagej.net/​software/​fiji/​|FIJI]]** 
 +      * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) 
 + 
 +  * {{zen_icon.png?​35|}} **[[https://​www.zeiss.com/​microscopy/​en/​products/​software/​zeiss-zen.html|Zeiss ZEN Blue 3.8]]** 
 +      * Stitching and MIP of .CZI files 
 + 
 +  * {{slidebook_2022_icon.png?​35|}} **[[https://​www.intelligent-imaging.com/​slidebook|3i Slidebook Reader 2022]]** 
 +      * Supports .SLD file format. 
 + 
 +  * {{::​las_x.png?​35|}} **[[https://​www.leica-microsystems.com/​products/​microscope-software/​p/​leica-las-x-ls/​|LAS X Office]]** 
 +      * Supports .LIF file format. 
 + 
 +  * {{nis_icon.png?​35|}} **[[https://​www.microscope.healthcare.nikon.com/​products/​software/​nis-elements/​viewer|Nikon NIS-Elements Viewer 5.21]]** 
 +      * Supports .ND2 file format 
 + 
 +  * {{::​ndpview_icon.png?​35|}} **[[https://​www.hamamatsu.com/​eu/​en/​product/​life-science-and-medical-systems/​digital-slide-scanner/​U12388-01.html|Hamamatsu NDP.View 2]]** 
 +      * Supports .NDPI file format 
 + 
 +  * {{::​living_image.png?​32|}} **[[https://​www.perkinelmer.com/​product/​li-software-for-lumina-1-seat-add-on-128110|Living Image 3.2]]** 
 +      * Analyze data from IVIS Lumina 
  
-If Big Guy is not powerful enough for your needscheck out the [[colossus|Colossus]].+{{:​warning.png?​25|}} Data files older than **3 months** will be automatically deleted on this systemplease copy your data to the iMM server using the desktop link.
  
 ---- ----
-[[resources|Back to the Resources ​page]]+[[resources|Back to the Equipment ​page]]
colossus.txt · Last modified: 2024/01/18 01:23 by bioimaging