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amira

 
 
 
Year installed: 2020
 
Location: main lab
Amira Workstation Usage Statistics

System overview

This workstation has Amira v2020 for 3D image processing and analysis and the Gen5 software (for processing+analysing Cytation5 datasets). It can also be booked for processing demanding FIJI, QuPath and Ilastik operations, and other open-source tools (eg, AI/ML workflows). If you are not familiar with Amira you can find excellent tutorials here: https://www.youtube.com/playlist?list=PLoxdPzacxPYjDVMD4tPCaVbuQjxYizr_g

Workstation specs (2025)

  • CPU: Intel i9 9900X (10×2 cores) @3.5GHz (max 4.4GHz)
  • RAM: 128 GB DDR4
  • Graphics: nVidia GeForce RTX2070 - 8 GB VRAM
  • OS: Windows10 Pro 64 Bits
  • Data storage: 1TB SSD + 8Tb HHD (both temp space only!)

⇒ Data is automatically deleted after 3 months of inactivity!

Software Installed

    • Amira v2020; SOFTWARE FOR 2D-5D MICROSCOPY IMAGE VISUALIZATION AND ANALYSIS
    • BioTek Gen5 Software for Imaging & Microscopy
    • FIJI is just ImageJ (“batteries-included” distribution of ImageJ2)
    • Open Software for Bioimage Analysis of whole slide images

Data files older than 3 months will be automatically deleted on this system, please copy your data to the server using the desktop link.


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amira.txt · Last modified: 2025/01/13 17:14 by bioimaging