Bioimaging Wiki

This workstation has Huygens v23.10.0p2 for image deconvolution and aberration correction. It can also be booked for processing demanding FIJI, QuPath and Ilastik operations, and other open-source tools (eg, AI/ML workflows).

• CPU: Intel i7 7800X (6×2 cores) @3.5GHz (max 3.50 GHz)
• RAM: 128 GB DDR4
• Graphics: nVidia GeForce GTX970 - 4 GB VRAM
• OS: Windows10 Pro 64 Bits
• Data storage: 1TB SSD (C:) + 8Tb HHD (D:) + 1TB SSD (E:) (both temp space only!)

⇒ Data is automatically deleted after 3 months of inactivity in both (D:) and (E:) drives

• Huygens
  • Amira v23.10.0p2; SOFTWARE FOR DECONVOLUTION AND ABERRATION CORRECTION

• FIJI
  • FIJI is just ImageJ (“batteries-included” distribution of ImageJ2)

• QuPath 0.4.3
  • Open Software for Bioimage Analysis of whole slide images

• 3i Slidebook Reader 2022
  • Supports .SLD file format.

• Nikon NIS-Elements Viewer 5.21
  • Supports .ND2 file format

Data files older than 3 months will be automatically deleted on this system, please copy your data to the server using the desktop link.

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