Data will be deleted after: 3 months  
 
 
 
Location: Bartolomeu Dias wing
→ Z3 Lightsheet Workstation Usage Statistics

===== System overview ===== Z3 is a 64-bit PC running Windows 10, equipped with: * 2x Intel® Xeon Processor E5.2620 @ 2.4GHz * 128 GB DDR4 RAM memory * 2x 256 GB SSD + 36 TB disk space * 8 GB NVIDIA Quadro P4000 (graphics card) * 28" TFT monitor ===== Software ===== * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.1 Desk]]** * **Airyscan Processing**, Stitching and MIP of .CZI files * {{zen_black_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Black 3.1 Desk]]** * **Lightsheet Processing** * {{:qupath_icon.png?35|}} **[[https://qupath.github.io/|QuPath 0.5.1]]** * Open Software for Bioimage Analysis of whole slide images * {{:matlab_icon.png?35|}} **[[https://www.mathworks.com/products/matlab.html?s_tid=hp_products_matlab|MATLAB R2024b]]** * Programming and numeric computing platform, with the following toolboxes: Curve Fitting, Image Acquisition and Image Processing, Optimization and Parallel Computing, Partial Differential Equation and Statistics and Machine Learning * {{:cellprofiler-icon.png?35|}} **[[https://cellprofiler.org/|CellProfiler 4.2.8]]** * Open Software for Bioimage Analysis to quantitatively measure phenotypes from thousands of images automatically. * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 6]]** * Supports .SLD file format. {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the file server using the desktop link. ---- [[resources|Back to the Equipment page]]