Bioimaging Wiki

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
<html>
<img src="/facility/bioimaging/lib/exe/fetch.php?media=oeiras_huygens_workstation_name_gimm_2024.png">
<table style="border:0px solid white;">
<tr style="border:0px solid white;">
<td style="border:0px solid white;">
<a href="/facility/bioimaging/lib/exe/fetch.php?media=oeiras_-_huygens_workstation.png"><img src="/facility/bioimaging/lib/exe/fetch.php?media=oeiras_-_huygens_workstation.png"></a>
<td style="border:0px solid white;"> <p style="line-height:1.8">
&nbsp <br>
&nbsp <br>
&nbsp <br><b>Year installed</b>: 2020 <br>
&nbsp <br><b>Location</b>: main lab <br> 
&rarr; <a href="/facility/bioimaging/doku.php?id=huygens_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png">  Huygens Workstation Usage Statistics</a>
 </p>
</td>
</tr>
</table>
</html>

===== System overview =====

This workstation has Huygens v23.10.0p2 for image deconvolution and aberration correction. 
It can also be booked for processing demanding FIJI, QuPath and Ilastik operations, and other open-source tools (eg, AI/ML workflows).

===== Workstation specs (2025)  =====

  * CPU: Intel i7 7800X (6x2 cores) @3.5GHz (max 3.50 GHz)
  * RAM: 128 GB DDR4
  * Graphics: nVidia GeForce GTX970 - 4 GB VRAM
  * OS: Windows10 Pro 64 Bits
  * Data storage: 1TB SSD (C:) + 8Tb HHD (D:) + 1TB SSD (E:) (both temp space only!)
     => Data is automatically deleted after 3 months of inactivity in both (D:) and (E:) drives


===== Software Installed =====

  * {{:huygens_icon.png?35|}} **[[https://svi.nl/HomePage|Huygens]]**
      * Amira v23.10.0p2; SOFTWARE FOR DECONVOLUTION AND ABERRATION CORRECTION

  * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]**
      * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2)

  * {{:qupath_icon.png?40|}} **[[https://qupath.github.io/|QuPath 0.4.3]]**
      * Open Software for Bioimage Analysis of whole slide images

  * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 2022]]**
      * Supports .SLD file format.

  * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements/viewer|Nikon NIS-Elements Viewer 5.21]]**
      * Supports .ND2 file format


{{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the server using the desktop link.

----
[[resources|Back to the Equipment page]]
Bioimaging Wiki

User Tools

Site Tools

Page Tools
