Bioimaging Wiki

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
<html>
<img src="/facility/bioimaging/lib/exe/fetch.php?media=lisbon_chronos_workstation_name_gimm_2024.png">
<table style="border:0px solid white;">
<tr style="border:0px solid white;">
<td style="border:0px solid white;">
<a href="/facility/bioimaging/lib/exe/fetch.php?media=chronos.png"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chronos.png"></a>
<td style="border:0px solid white;"> <p style="line-height:1.8">
&nbsp <br>
&nbsp <br>
&nbsp <br>
Data will be deleted after: <b>3 months</b>
&nbsp <br>
&nbsp <br>
&nbsp <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-5</a><br> 
&rarr; <a href="/facility/bioimaging/doku.php?id=chronos_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png">  Chronos Usage Statistics</a>
 </p>
</td>
</tr>
</table>
</html>

===== System overview =====
Chronos is a 64-bit PC running Windows 10, equipped with:
  * 2x Intel® Xeon Processor E5 v4 Family (40 processors) @ 2.2GHz
  * 128 GB RAM memory
  * 2x 240 GB SSD + 55 TB disk space (6 x 12 TB disks configured as RAID 5)
  * 8 GB NVIDIA RTX4000, CUDA capable (graphic card)
  * 26" TFT monitor

Please [[imm-bioimaging@medicina.ulisboa.pt|contact us]] if you wish to use the workstation remotely.

===== Software  =====

  * {{:imaris_icon.png?35|}}  **[[https://imaris.oxinst.com/|Imaris 9.9.1]]**
      * Visualization, analysis and processing of 3D and 4D microscopy datasets

  * {{:qupath_icon.png?40|}} **[[https://qupath.github.io/|QuPath 0.4.3]]**
      * Open Software for Bioimage Analysis of whole slide images

  * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]**
      * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2)

  * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.3 Desk]]**
      * **Airyscan Processing**, Stitching and MIP of .CZI files

  * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 2022]]**
      * Supports .SLD file format.

  * {{::las_x.png?35|}} **[[https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/|LAS X Office]]**
      * Supports .LIF file format.

  * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements/viewer|Nikon NIS-Elements Viewer 5.21]]**
      * Supports .ND2 file format

  * {{::ndpview_icon.png?35|}} **[[https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html|Hamamatsu NDP.View 2]]**
      * Supports .NDPI file format


{{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the GIMM server using the desktop link.

----
[[resources|Back to the Equipment page]]
Bioimaging Wiki

User Tools

Site Tools

Page Tools
