z2_workstation
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z2_workstation [2025/01/10 16:58] bioimaging |
z2_workstation [2025/01/10 17:14] (current) bioimaging |
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| ===== System overview ===== | ===== System overview ===== | ||
| - | Z2 is a 64-bit PC running Windows 10, equipped with: | + | Z2 is a 64-bit PC running Windows 10, dedicated to light sheet imaging analysis, equipped with: |
| * 2x Intel® Xeon Processor E5.2620 @ 2.4GHz | * 2x Intel® Xeon Processor E5.2620 @ 2.4GHz | ||
| - | * 128 GB DDR4 RAM memory | + | * 256 GB DDR4 RAM memory |
| * 2x 256 GB SSD + 36 TB disk space | * 2x 256 GB SSD + 36 TB disk space | ||
| * 8 GB NVIDIA Quadro P4000 (graphics card) | * 8 GB NVIDIA Quadro P4000 (graphics card) | ||
| - | * 28" TFT monitor | + | * 30" TFT monitor |
| ===== Software ===== | ===== Software ===== | ||
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| * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.11 Desk]]** | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.11 Desk]]** | ||
| - | * **Airyscan Processing**, Stitching and MIP of .CZI files | + | * **Lightsheet Processing** |
| - | * {{zen_black_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Black 3.11 Desk]]** | + | * {{zen__black_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Black 2014 SP1]]** |
| * **Lightsheet Processing** | * **Lightsheet Processing** | ||
| - | * {{:qupath_icon.png?35|}} **[[https://qupath.github.io/|QuPath 0.5.1]]** | ||
| - | * Open Software for Bioimage Analysis of whole slide images | ||
| * {{:matlab_icon.png?35|}} **[[https://www.mathworks.com/products/matlab.html?s_tid=hp_products_matlab|MATLAB R2020a]]** | * {{:matlab_icon.png?35|}} **[[https://www.mathworks.com/products/matlab.html?s_tid=hp_products_matlab|MATLAB R2020a]]** | ||
| * Programming and numeric computing platform, with the following toolboxes: Curve Fitting, Image Acquisition and Image Processing, Optimization and Parallel Computing, Partial Differential Equation and Statistics and Machine Learning | * Programming and numeric computing platform, with the following toolboxes: Curve Fitting, Image Acquisition and Image Processing, Optimization and Parallel Computing, Partial Differential Equation and Statistics and Machine Learning | ||
| - | |||
| - | * {{:cellprofiler-icon.png?35|}} **[[https://cellprofiler.org/|CellProfiler 4.2.8]]** | ||
| - | * Open Software for Bioimage Analysis to quantitatively measure phenotypes from thousands of images automatically. | ||
| - | |||
| - | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 6]]** | ||
| - | * Supports .SLD file format. | ||
| * {{arivis_icon.png?35|}} **[[https://www.zeiss.com.sg/microscopy/l/campaigns/software/2023/arivis-vision4d.html|Arivis 4D Vision v3.1.2]]** | * {{arivis_icon.png?35|}} **[[https://www.zeiss.com.sg/microscopy/l/campaigns/software/2023/arivis-vision4d.html|Arivis 4D Vision v3.1.2]]** | ||
z2_workstation.1736524718.txt.gz · Last modified: 2025/01/10 16:58 by bioimaging
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