huygens
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huygens [2025/01/06 01:46] bioimaging created |
huygens [2025/01/13 16:47] (current) bioimaging [Workstation specs (2025)] |
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| - | <a href="/facility/bioimaging/lib/exe/fetch.php?media=huygens.png"><img src="/facility/bioimaging/lib/exe/fetch.php?media=huygens.png"></a> | + | <a href="/facility/bioimaging/lib/exe/fetch.php?media=oeiras_-_huygens_workstation.png"><img src="/facility/bioimaging/lib/exe/fetch.php?media=oeiras_-_huygens_workstation.png"></a> |
| <td style="border:0px solid white;"> <p style="line-height:1.8"> | <td style="border:0px solid white;"> <p style="line-height:1.8"> | ||
|   <br> |   <br> | ||
|   <br> |   <br> | ||
| - |   <br> | + |   <br><b>Year installed</b>: 2020 <br> |
| - |   <br> | + |   <br><b>Location</b>: main lab <br> |
| - |   <br> | + | → <a href="/facility/bioimaging/doku.php?id=huygens_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Huygens Workstation Usage Statistics</a> |
| - |   <br> | + | |
| - |   <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-5</a><br> | + | |
| - | → <a href="/facility/bioimaging/doku.php?id=chronos_usage"><img src="/facility/bioimaging/lib/exe/fetch.php?media=chart_line.png"> Chronos Usage Statistics</a> | + | |
| </p> | </p> | ||
| </td> | </td> | ||
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| ===== System overview ===== | ===== System overview ===== | ||
| + | This workstation has Huygens v23.10.0p2 for image deconvolution and aberration correction. | ||
| + | It can also be booked for processing demanding FIJI, QuPath and Ilastik operations, and other open-source tools (eg, AI/ML workflows). | ||
| + | |||
| + | ===== Workstation specs (2025) ===== | ||
| + | |||
| + | * CPU: Intel i7 7800X (6x2 cores) @3.5GHz (max 3.50 GHz) | ||
| + | * RAM: 128 GB DDR4 | ||
| + | * Graphics: nVidia GeForce GTX970 - 4 GB VRAM | ||
| + | * OS: Windows10 Pro 64 Bits | ||
| + | * Data storage: 1TB SSD (C:) + 8Tb HHD (D:) + 1TB SSD (E:) (both temp space only!) | ||
| + | => Data is automatically deleted after 3 months of inactivity in both (D:) and (E:) drives | ||
| + | |||
| + | |||
| + | ===== Software Installed ===== | ||
| + | |||
| + | * {{:huygens_icon.png?35|}} **[[https://svi.nl/HomePage|Huygens]]** | ||
| + | * Amira v23.10.0p2; SOFTWARE FOR DECONVOLUTION AND ABERRATION CORRECTION | ||
| + | |||
| + | * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** | ||
| + | * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) | ||
| + | |||
| + | * {{:qupath_icon.png?40|}} **[[https://qupath.github.io/|QuPath 0.4.3]]** | ||
| + | * Open Software for Bioimage Analysis of whole slide images | ||
| + | |||
| + | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 2022]]** | ||
| + | * Supports .SLD file format. | ||
| + | |||
| + | * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements/viewer|Nikon NIS-Elements Viewer 5.21]]** | ||
| + | * Supports .ND2 file format | ||
| - | ===== Software ===== | ||
| + | {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the server using the desktop link. | ||
| ---- | ---- | ||
| [[resources|Back to the Equipment page]] | [[resources|Back to the Equipment page]] | ||
huygens.1736124382.txt.gz · Last modified: 2025/01/06 01:46 by bioimaging
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