chronos
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chronos [2025/01/14 16:48] bioimaging [Software] |
chronos [2025/07/19 22:26] (current) bioimaging |
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| - | Data will be deleted after: <b>3 months</b> | + | Processing Data will be deleted after: <b>1 month</b> <br> |
| - |   <br> | + | Storage Data will be deleted after: <b>3 months</b> |
|   <br> |   <br> | ||
|   <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-5</a><br> |   <br><b>Location</b>: <a href="/facility/bioimaging/lib/exe/fetch.php?media=colossus_map_new.png">Room P3-A-5</a><br> | ||
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| ===== System overview ===== | ===== System overview ===== | ||
| Chronos is a 64-bit PC running Windows 10, equipped with: | Chronos is a 64-bit PC running Windows 10, equipped with: | ||
| - | * 2x Intel® Xeon Processor E5 v4 Family (40 processors) @ 2.2GHz | + | * 2x Intel EMR 6534 2P 8C Processors @ 3.9GHz |
| - | * 128 GB RAM memory | + | * 256 Gb RAM memory |
| - | * 2x 240 GB SSD + 55 TB disk space (6 x 12 TB disks configured as RAID 5) | + | * System disk: 960GB Samsung PM9A3 NVMe PCIe |
| - | * 8 GB NVIDIA RTX4000, CUDA capable (graphic card) | + | * Data Storage: 7 Tb |
| + | * Data Processing: 7 Tb (2x Samsung PM893 3.84 TB SATA 6Gb/s as RAID 0) | ||
| + | * Nvidia RTX4000 ADA Gen 20GB, CUDA capable (graphic card) | ||
| * 26" TFT monitor | * 26" TFT monitor | ||
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| ===== Software ===== | ===== Software ===== | ||
| - | * {{:imaris_icon.png?35|}} **[[https://imaris.oxinst.com/|Imaris 9.9.1]]** | + | * {{::cell_profiler.png?35|}} **[[https://cellprofiler.org/|CellProfiler 4.2.8]]** |
| - | * Visualization, analysis and processing of 3D and 4D microscopy datasets | + | * Free, open-source software for quantitative analysis of biological images |
| - | + | ||
| - | * {{:qupath_icon.png?40|}} **[[https://qupath.github.io/|QuPath 0.4.3]]** | + | |
| - | * Open Software for Bioimage Analysis of whole slide images | + | |
| * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** | * {{:fiji_icon.png?35|}} **[[https://imagej.net/software/fiji/|FIJI]]** | ||
| * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) | * FIJI is just ImageJ (“batteries-included” distribution of ImageJ2) | ||
| - | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|Zeiss ZEN Blue 3.9 Desk]]** | + | * {{:imaris_icon.png?35|}} **[[https://imaris.oxinst.com/|Imaris 10.2.0 CF]]** |
| - | * **Airyscan Processing**, Stitching and MIP of .CZI files | + | * Visualization, analysis and processing of 3D and 4D microscopy datasets |
| - | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|3i Slidebook Reader 2022]]** | + | * {{::ndpview_icon.png?35|}} **[[https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html|NDP.View 2]]** |
| - | * Supports .SLD file format. | + | * Supports .NDPI file format |
| - | * {{::las_x.png?35|}} **[[https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/|LAS X Office]]** | + | * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements/viewer|NIS-Elements Viewer 5.21]]** |
| - | * Supports .LIF file format. | + | |
| - | + | ||
| - | * {{nis_icon.png?35|}} **[[https://www.microscope.healthcare.nikon.com/products/software/nis-elements/viewer|Nikon NIS-Elements Viewer 5.21]]** | + | |
| * Supports .ND2 file format | * Supports .ND2 file format | ||
| - | * {{::ndpview_icon.png?35|}} **[[https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html|Hamamatsu NDP.View 2]]** | + | * {{:qupath_icon.png?40|}} **[[https://qupath.github.io/|QuPath 0.6.0]]** |
| - | * Supports .NDPI file format | + | * Open Software for Bioimage Analysis of whole slide images |
| + | * {{slidebook_2022_icon.png?35|}} **[[https://www.intelligent-imaging.com/slidebook|Slidebook Reader 2025]]** | ||
| + | * Supports .SLD file format. | ||
| + | |||
| + | * {{zen_icon.png?35|}} **[[https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html|ZEN Blue 3.12 Desk]]** | ||
| + | * **Airyscan Processing**, Stitching and MIP of .CZI files | ||
| {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the GIMM server using the desktop link. | {{:warning.png?25|}} Data files older than **3 months** will be automatically deleted on this system, please copy your data to the GIMM server using the desktop link. | ||
chronos.1736869738.txt.gz · Last modified: 2025/01/14 16:48 by bioimaging
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